Index

A

air_rate (forced_choice.stages.ExperimentConfig attribute) animal (forced_choice.graphics.TrialOutcome attribute) animal_id (forced_choice.stages.AnimalStage attribute)

AnimalStage (class in forced_choice.stages) apply_config_ui() (forced_choice.stages.ExperimentConfig method)

B

bad_iti (forced_choice.stages.ExperimentConfig attribute) beta_trials_max (forced_choice.stages.ExperimentConfig attribute)

beta_trials_min (forced_choice.stages.ExperimentConfig attribute) block (forced_choice.graphics.TrialOutcome attribute) (forced_choice.stages.AnimalStage attribute)

C

config (forced_choice.stages.AnimalStage attribute) configs (forced_choice.stages.RootStage attribute) create_daqin_devs() (forced_choice.stages.RootStage method) create_daqout_devs() (forced_choice.stages.RootStage method)

create_mfc_devs() (forced_choice.stages.RootStage method) create_odor_devs() (forced_choice.stages.RootStage method) create_sound_devs() (forced_choice.stages.RootStage method)

D

daq_in_dev (forced_choice.stages.RootStage attribute) daq_out_dev (forced_choice.stages.RootStage attribute) DAQInDevice (class in forced_choice.devices) DAQInDeviceBase (class in forced_choice.devices) DAQInDeviceSim (class in forced_choice.devices) DAQOutDevice (class in forced_choice.devices) DAQOutDeviceBase (class in forced_choice.devices) DAQOutDeviceSim (class in forced_choice.devices)

do_decision() (forced_choice.stages.AnimalStage method) do_equal_random() (forced_choice.stages.ExperimentConfig method) do_nose_poke() (forced_choice.stages.AnimalStage method) do_nose_poke_exit() (forced_choice.stages.AnimalStage method) do_odor_list() (forced_choice.stages.ExperimentConfig method) do_odor_random() (forced_choice.stages.ExperimentConfig method) do_odor_release() (forced_choice.stages.AnimalStage method)

E

ExperimentConfig (class in forced_choice.stages)

extract_odor() (in module forced_choice.stages)

F

fans (forced_choice.devices.DAQOutDeviceBase attribute) fans_pin (forced_choice.devices.DAQOutDevice attribute) feeder_l (forced_choice.devices.DAQOutDeviceBase attribute) feeder_l_pin (forced_choice.devices.DAQOutDevice attribute) feeder_r (forced_choice.devices.DAQOutDeviceBase attribute) feeder_r_pin (forced_choice.devices.DAQOutDevice attribute) filter_len (forced_choice.stages.RootStage attribute) forced_choice (module) forced_choice.devices (module)

forced_choice.graphics (module) forced_choice.main (module) forced_choice.stages (module) ForcedChoiceApp (class in forced_choice.main) ftdi_chan (forced_choice.stages.RootStage attribute) FTDIOdors (class in forced_choice.devices) FTDIOdorsBase (class in forced_choice.devices) FTDIOdorsSim (class in forced_choice.devices)

G

good_iti (forced_choice.stages.ExperimentConfig attribute)

H

house_light (forced_choice.devices.DAQOutDeviceBase attribute)

house_light_pin (forced_choice.devices.DAQOutDevice attribute)

I

incomplete (forced_choice.graphics.TrialOutcome attribute) incomplete_iti (forced_choice.stages.ExperimentConfig attribute) init_outcome() (forced_choice.graphics.TrialOutcome method) init_trial() (forced_choice.stages.AnimalStage method) initialize_animal() (forced_choice.stages.AnimalStage method)

initialize_box() (forced_choice.stages.AnimalStage method) ir_leds (forced_choice.devices.DAQOutDeviceBase attribute) ir_leds_pin (forced_choice.devices.DAQOutDevice attribute) iti (forced_choice.graphics.TrialOutcome attribute) (forced_choice.stages.AnimalStage attribute)

L

log_filename (forced_choice.stages.RootStage attribute)

M

max_decision_duration (forced_choice.stages.ExperimentConfig attribute) max_nose_poke (forced_choice.stages.ExperimentConfig attribute) mfc_a (forced_choice.stages.RootStage attribute) mfc_a_rate (forced_choice.stages.ExperimentConfig attribute) mfc_air (forced_choice.stages.RootStage attribute)

mfc_b (forced_choice.stages.RootStage attribute) mfc_b_rate (forced_choice.stages.ExperimentConfig attribute) min_nose_poke (forced_choice.stages.ExperimentConfig attribute) mix_dur (forced_choice.stages.ExperimentConfig attribute) mix_valve (forced_choice.stages.ExperimentConfig attribute)

N

n_valve_boards (forced_choice.devices.FTDIOdorsBase attribute) (forced_choice.stages.RootStage attribute) NO_valve (forced_choice.stages.ExperimentConfig attribute) nose_beam (forced_choice.devices.DAQInDeviceBase attribute) nose_beam_pin (forced_choice.devices.DAQInDevice attribute) nose_poke_exit_timed_out (forced_choice.stages.AnimalStage attribute)

nose_poke_exit_ts (forced_choice.stages.AnimalStage attribute) nose_poke_ts (forced_choice.stages.AnimalStage attribute) num_blocks (forced_choice.stages.ExperimentConfig attribute) num_pellets (forced_choice.stages.ExperimentConfig attribute) num_trials (forced_choice.stages.ExperimentConfig attribute)

O

odor (forced_choice.graphics.TrialPrediction attribute) (forced_choice.stages.AnimalStage attribute) odor_beta (forced_choice.stages.ExperimentConfig attribute) odor_delay (forced_choice.stages.ExperimentConfig attribute) odor_dev (forced_choice.stages.RootStage attribute) odor_equalizer (forced_choice.stages.ExperimentConfig attribute) odor_method (forced_choice.stages.ExperimentConfig attribute) odor_names (forced_choice.stages.ExperimentConfig attribute) odor_opts (forced_choice.stages.ExperimentConfig attribute) odor_outcome (forced_choice.stages.AnimalStage attribute)

odor_path (forced_choice.stages.ExperimentConfig attribute) odor_selection (forced_choice.stages.ExperimentConfig attribute) odor_side (forced_choice.stages.ExperimentConfig attribute) odor_start_ts (forced_choice.stages.AnimalStage attribute) odor_widgets (forced_choice.stages.AnimalStage attribute) outcome (forced_choice.graphics.TrialPrediction attribute) (forced_choice.stages.AnimalStage attribute) outcome_text (forced_choice.graphics.TrialPrediction attribute) outcome_wid (forced_choice.stages.AnimalStage attribute) outcomes (forced_choice.stages.AnimalStage attribute)

P

passed (forced_choice.graphics.TrialOutcome attribute) post_trial() (forced_choice.stages.AnimalStage method) pre_block() (forced_choice.stages.AnimalStage method)

pre_trial() (forced_choice.stages.AnimalStage method) predict_widget (forced_choice.stages.AnimalStage attribute)

R

reward_beam_l (forced_choice.devices.DAQInDeviceBase attribute) reward_beam_l_pin (forced_choice.devices.DAQInDevice attribute) reward_beam_r (forced_choice.devices.DAQInDeviceBase attribute) reward_beam_r_pin (forced_choice.devices.DAQInDevice attribute) reward_entry_timed_out (forced_choice.stages.AnimalStage attribute)

reward_entry_ts (forced_choice.stages.AnimalStage attribute) reward_side (forced_choice.stages.AnimalStage attribute) rewarded (forced_choice.graphics.TrialOutcome attribute) RootStage (class in forced_choice.stages) run_app (in module forced_choice.main)

S

select_odor() (in module forced_choice.stages) server (forced_choice.stages.RootStage attribute) side (forced_choice.graphics.TrialOutcome attribute) (forced_choice.graphics.TrialPrediction attribute) (forced_choice.stages.AnimalStage attribute) side_rewarded (forced_choice.graphics.TrialPrediction attribute) side_went (forced_choice.graphics.TrialOutcome attribute) (forced_choice.graphics.TrialPrediction attribute) (forced_choice.stages.AnimalStage attribute) simulate (forced_choice.stages.RootStage attribute) sound (forced_choice.stages.AnimalStage attribute)

sound_cue_delay (forced_choice.stages.ExperimentConfig attribute) sound_dur (forced_choice.stages.ExperimentConfig attribute) sound_file_l (forced_choice.stages.RootStage attribute) sound_file_r (forced_choice.stages.RootStage attribute) sound_l (forced_choice.stages.RootStage attribute) sound_r (forced_choice.stages.RootStage attribute) start_mixing() (forced_choice.stages.AnimalStage method)

T

tinp (forced_choice.graphics.TrialOutcome attribute) total_fail (forced_choice.stages.AnimalStage attribute) total_incomplete (forced_choice.stages.AnimalStage attribute) total_pass (forced_choice.stages.AnimalStage attribute) tracker (forced_choice.stages.RootStage attribute) trial (forced_choice.graphics.TrialOutcome attribute) (forced_choice.graphics.TrialPrediction attribute) (forced_choice.stages.AnimalStage attribute) trial_odors (forced_choice.stages.ExperimentConfig attribute)

trial_start_time (forced_choice.stages.AnimalStage attribute) trial_start_ts (forced_choice.stages.AnimalStage attribute) TrialOutcome (class in forced_choice.graphics) TrialPrediction (class in forced_choice.graphics) ttnp (forced_choice.graphics.TrialOutcome attribute) ttrp (forced_choice.graphics.TrialOutcome attribute)

U

update_trial_odor() (forced_choice.stages.AnimalStage method) use_mfc (forced_choice.stages.RootStage attribute)

use_mfc_air (forced_choice.stages.RootStage attribute)

V

valve_mfc (forced_choice.stages.ExperimentConfig attribute)

W

wait_for_nose_poke (forced_choice.stages.ExperimentConfig attribute)